A machine-learning based type III effectors predictor
Prof. Tal Pupko Lab - The Shmunis School of Biomedicine and Cancer Research
For every run of Effectidor you need to supply an ORFs input.
To analyze a single genome, watch the following video.
To analyze a pan-genome, watch the following video.
Additional input may include known effectors from the analyzed genomes.
Instructions for creating this input are found in this video.
Secretion signal feature and parameters to compute orthologs and paralogs.
Effectors data from exterior taxa.
Host proteome.
Proteomes of closely related bacteria without the T3SS.
If you wish to include genome organization and/or regulatory elements features, watch the following video:
GFF and full genome options.
Effector predictions:
Predictions video.
T3SS and flagella video.
Interpretation of the predictions using the features outputs:
Features video.